PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v1304790.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 291aa    MW: 32906.5 Da    PI: 4.4701
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v1304790.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM121.19.9e-38211317128
              NAM  17 eyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvf 108
                      ++Lk+k+ g+k+++ +vi+e+diyk+ PwdLp k  +k+++ +wyfF++r  ky+tg + nrat+ gyWk+tgkd++v + k+++vg+ +tLvf
  Lj1g3v1304790.2   2 YFLKRKILGRKFPF-DVIAELDIYKYAPWDLPdKsVLKTGDLKWYFFCPRGMKYSTGGKLNRATEFGYWKTTGKDRSVEH-KNQVVGMIRTLVF 93 
                      89************.99**************96446677888*************************************9.999********** PP

              NAM 109 ykgrapkgektdWvmheyrl 128
                      + grapkg +tdWvmhe+r+
  Lj1g3v1304790.2  94 HIGRAPKGDRTDWVMHEFRI 113
                      ******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-481136IPR003441NAC domain
PROSITE profilePS5100544.5511136IPR003441NAC domain
PfamPF023653.0E-152113IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MYFLKRKILG RKFPFDVIAE LDIYKYAPWD LPDKSVLKTG DLKWYFFCPR GMKYSTGGKL  60
NRATEFGYWK TTGKDRSVEH KNQVVGMIRT LVFHIGRAPK GDRTDWVMHE FRIEHKDLAD  120
KGIPQDSYVI CRVFQKEGPG PRNGAQYGKP FNEEDWDEDE EIDSKQSMPV ATTSAPGSVP  180
SCSTHPSAPN NQVDEFKEYD NTLSVNDYNG NEKVDHPDLA NNAEGGPYQD PNEIFGELGD  240
LDSLLGLGEA DLRGDPFSRG QEDECTTNEM LSTSSWFCGD GDFLELIDLD S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B6e-37313734166NAC domain-containing protein 19
4dul_A6e-37313734166NAC domain-containing protein 19
1ut7_B6e-37313734166NO APICAL MERISTEM PROTEIN
1ut7_A6e-37313734166NO APICAL MERISTEM PROTEIN
1ut4_B6e-37313734166NO APICAL MERISTEM PROTEIN
1ut4_A6e-37313734166NO APICAL MERISTEM PROTEIN
3swp_D7e-37313737169NAC domain-containing protein 19
3swp_C7e-37313737169NAC domain-containing protein 19
3swp_B7e-37313737169NAC domain-containing protein 19
3swp_A7e-37313737169NAC domain-containing protein 19
3swm_D7e-37313737169NAC domain-containing protein 19
3swm_C7e-37313737169NAC domain-containing protein 19
3swm_B7e-37313737169NAC domain-containing protein 19
3swm_A7e-37313737169NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004502931.11e-145PREDICTED: NAC domain-containing protein 78 isoform X1
RefseqXP_004502932.11e-145PREDICTED: NAC domain-containing protein 78 isoform X2
RefseqXP_004502933.11e-145PREDICTED: NAC domain-containing protein 78 isoform X2
SwissprotQ9FY822e-73NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A072V1771e-137A0A072V177_MEDTR; NAC domain class transcription factor
STRINGGLYMA06G15840.11e-100(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.12e-73NAC domain containing protein 103